Best Jasper prompts for Biological Scientists, All Other

Given a set of 1000 genomic sequences in FASTA format, and a set of 500 gene annotations in GFF format, use a combination of AWS services such as S3, EC2, and Batch to design a data pipeline that can process these sequences and annotations, and output a set of variant calls in VCF format, with a defect rate of less than 2% and latency of less than 2 days, and provide a detailed architecture diagram and deployment script.

Analyze a set of 20 microscope images of cell cultures, and a set of 10 environmental parameters such as temperature, humidity, and air quality, to identify the root cause of contamination in our cell culture process, using a combination of image processing techniques and statistical analysis, and provide a detailed report including a fishbone diagram and a set of recommendations for process improvements.

Design an experiment to test the efficacy of a CRISPR gene editing protocol, using a set of 5 guide RNAs and 3 different cell lines, with 3 replicates per condition, and a set of 10 outcome measures such as gene expression and protein levels, and provide a detailed experimental plan including a set of primers and probes, and a statistical analysis plan.

Analyze a set of 50 16S rRNA gene sequences from a microbial community, using a combination of bioinformatic tools such as QIIME and RAxML, to infer the phylogenetic relationships among the microorganisms, and provide a detailed report including a phylogenetic tree and a set of summary statistics such as alpha diversity and beta diversity, and interpret the results in the context of the ecosystem and the potential applications in biotechnology.